Baixe o app para aproveitar ainda mais
Prévia do material em texto
Universidade Federal do Rio de Janeiro Profa Gisele Amorim Bioquímica Aula 2: Aminoácidos Proteínas ü Enzimas, hormônios, an=corpos, transportadores, fibras musculares etc. ü An=bió=cos, venenos etc. ü Polímeros de aminoácidos ligados por um =po especifico de ligação covalente. ü Todas as proteínas, mesmo as pertencentes às mais an=gas linhagens de bactérias, ou aos organismos mais complexos, são formadas por repe=ções dos mesmos 20 aminoácidos. Apolares alifá1cos Apolares aromáticos O grupamento hidroxila da tirosina pode formar pontes de hidrogênio, é um importante grupamento funcional no sítio catalítico de algumas enzimas. Tirosina e triptofano são significativamente mais polares do que fenilalanina, devido a hidroxila fenólica da tirosina e ao nitrogênio indólico do triptofano São mais hidrofílicos que os aminoácidos apolares porque contém grupamentos funcionais capazes de fazer ligações de hidrogênio com a água A polaridade da serina e da treonina é devida à hidroxila (–OH) A polaridade da cisteína é devida à sulfidrila (-SH) Os grupamentos amida conferem polaridade às cadeias laterais da asparagina e da glutamina Polares não carregados Grupamentos R com carga positiva (básicos) Muito hidrofílicos. Apresentam carga elétrica positiva em pH fisiológico. Lisina contém uma amina primária Arginina contém um grupamento guanidino Histidina contém um grupamento imidazol amina guanidino imidazol Possuem carga negativa em pH fisiológico Grupamentos R com carga negativa (ácidos) Cisteínas -‐ Ligações Dissulfeto A cisteína é facilmente oxidada para formar uma cistina através de uma ligação covalente do tipo dissulfeto As ligações dissulfeto tem um papel muito importante na estrutura de muitas proteínas formando ligações covalentes entre diferentes partes de uma molécula de proteína ou entre duas cadeias polipeptídicas diferentes. Aminoácidos “não-‐padrão” Presentes em certas proteínas Aminoácidos “não-‐padrão” Não ocorrem em proteínas Nomenclatura dos átomos da cadeia lateral G -‐ Glycine (Gly) P -‐ Proline (Pro) A -‐ Alanine (Ala) V -‐ Valine (Val) L -‐ Leucine (Leu) I -‐ Isoleucine (Ile) M -‐ Methionine (Met) C -‐ Cysteine (Cys) F -‐ Phenylalanine (Phe) Y -‐ Tyrosine (Tyr) W -‐ Tryptophan (Trp) H -‐ His=dine (His) K -‐ Lysine (Lys) R -‐ Arginine (Arg) Q -‐ Glutamine (Gln) N -‐ Asparagine (Asn) E -‐ Glutamic Acid (Glu) D -‐ Aspar=c Acid (Asp) S -‐ Serine (Ser) T -‐ Threonine (Thr) Código de três letras e uma letra para os aminoácidos Podem ionizar? Ionização dos Aminoácidos São anfóteros, como a água pH fisiológico? pKa COOH: 1,8-‐2,7 pKa NH2: 8,8-‐10,6 pKa reflete a tendência de um acido fraco em doar/perder um próton Ionização dos grupos amino e carboxila depende do pH Propriedades Acido-‐Básicas dos Aminoácidos Curva de 1tulação da glicina Curva de 1tulação da glicina group in the range of 1.8 to 2.4, and pKa of the ONH3! group in the range of 8.8 to 11.0 (Table 3–1). Second, amino acids with an ionizable R group have more complex titration curves, with three stages corre- sponding to the three possible ionization steps; thus they have three pKa values. The additional stage for the titration of the ionizable R group merges to some extent with the other two. The titration curves for two amino acids of this type, glutamate and histidine, are shown in Figure 3–12. The isoelectric points reflect the nature of the ionizing R groups present. For example, glutamate Chapter 3 Amino Acids, Peptides, and Proteins84 10 8 6 4 2 0 Glutamate H3N ! N ! N ! C COOH C C COOH H2 H2 H pK1 H3 C COO" C C COOH H2 H2 H pKR H3 C COO" C C COO" H2 H2 H pK2 H2N C COO" C C COO" H2 H2 H pK2 # 9.67 pKR # 4.25 pK1 # 2.19 1.0 2.0 3.0 pH OH" (equivalents) (a) FIGURE 3–12 Titration curves for (a) glutamate and (b) histidine. The pKa of the R group is designated here as pKR. The second piece of information provided by the titration curve of glycine is that this amino acid has two regions of buffering power. One of these is the relatively flat portion of the curve, extending for approximately 1 pH unit on either side of the first pKa of 2.34, indi- cating that glycine is a good buffer near this pH. The other buffering zone is centered around pH 9.60. (Note that glycine is not a good buffer at the pH of intracel- lular fluid or blood, about 7.4.) Within the buffering ranges of glycine, the Henderson-Hasselbalch equation (see Box 2–3) can be used to calculate the proportions of proton-donor and proton-acceptor species of glycine required to make a buffer at a given pH. Titration Curves Predict the Electric Charge of Amino Acids Another important piece of information derived from the titration curve of an amino acid is the relationship between its net electric charge and the pH of the solu- tion. At pH 5.97, the point of inflection between the two stages in its titration curve, glycine is present pre- dominantly as its dipolar form, fully ionized but with no net electric charge (Fig. 3–10). The characteristic pH at which the net electric charge is zero is called the isoelectric point or isoelectric pH, designated pI. For glycine, which has no ionizable group in its side chain, the isoelectric point is simply the arithmetic mean of the two pKa values: pI # $ 1 2$ (pK1 ! pK2) # $ 1 2$ (2.34 ! 9.60) # 5.97 As is evident in Figure 3–10, glycine has a net negative charge at any pH above its pI and will thus move toward the positive electrode (the anode) when placed in an electric field. At any pH below its pI, glycine has a net positive charge and will move toward the negative elec- trode (the cathode). The farther the pH of a glycine so- lution is from its isoelectric point, the greater the net electric charge of the population of glycine molecules. At pH 1.0, for example, glycine exists almost entirely as the form !H3NOCH2OCOOH, with a net positive charge of 1.0. At pH 2.34, where there is an equal mix- ture of !H3NOCH2OCOOH and !H3NOCH2OCOO", the average or net positive charge is 0.5. The sign and the magnitude of the net charge of any amino acid at any pH can be predicted in the same way. Amino Acids Differ in Their Acid-Base Properties The shared properties of many amino acids permit some simplifying generalizations about their acid-base behav- iors. First, all amino acids with a single !-amino group, a single !-carboxyl group, and an R group that does not ionize have titration curves resembling that of glycine (Fig. 3–10). These amino acids have very similar, al- though not identical, pKa values: pKa of the OCOOH C H3N ! C COOH C CH C H N H2 H H3N ! C COO" CH2 H H3N ! C COO" CH2 H H2N C CH2 H pK1 # 1.82 pKR # 6.0 pK2 # 9.17 C H N CH C H N ! H C H N CH C H N ! H C H N CH C H N 10 8 6 4 2 0 1.0 2.0 3.0 pH OH" (equivalents) (b) COO" H N Histidine pK2pKRpK1 8885d_c03_084 12/23/03 10:21 AM Page 84 mac111 mac111:reb: group in the range of 1.8 to 2.4, and pKa of the ONH3! group in the range of 8.8 to 11.0 (Table 3–1). Second, amino acids with an ionizable R group have more complextitration curves, with three stages corre- sponding to the three possible ionization steps; thus they have three pKa values. The additional stage for the titration of the ionizable R group merges to some extent with the other two. The titration curves for two amino acids of this type, glutamate and histidine, are shown in Figure 3–12. The isoelectric points reflect the nature of the ionizing R groups present. For example, glutamate Chapter 3 Amino Acids, Peptides, and Proteins84 10 8 6 4 2 0 Glutamate H3N ! N ! N ! C COOH C C COOH H2 H2 H pK1 H3 C COO" C C COOH H2 H2 H pKR H3 C COO" C C COO" H2 H2 H pK2 H2N C COO" C C COO" H2 H2 H pK2 # 9.67 pKR # 4.25 pK1 # 2.19 1.0 2.0 3.0 pH OH" (equivalents) (a) FIGURE 3–12 Titration curves for (a) glutamate and (b) histidine. The pKa of the R group is designated here as pKR. The second piece of information provided by the titration curve of glycine is that this amino acid has two regions of buffering power. One of these is the relatively flat portion of the curve, extending for approximately 1 pH unit on either side of the first pKa of 2.34, indi- cating that glycine is a good buffer near this pH. The other buffering zone is centered around pH 9.60. (Note that glycine is not a good buffer at the pH of intracel- lular fluid or blood, about 7.4.) Within the buffering ranges of glycine, the Henderson-Hasselbalch equation (see Box 2–3) can be used to calculate the proportions of proton-donor and proton-acceptor species of glycine required to make a buffer at a given pH. Titration Curves Predict the Electric Charge of Amino Acids Another important piece of information derived from the titration curve of an amino acid is the relationship between its net electric charge and the pH of the solu- tion. At pH 5.97, the point of inflection between the two stages in its titration curve, glycine is present pre- dominantly as its dipolar form, fully ionized but with no net electric charge (Fig. 3–10). The characteristic pH at which the net electric charge is zero is called the isoelectric point or isoelectric pH, designated pI. For glycine, which has no ionizable group in its side chain, the isoelectric point is simply the arithmetic mean of the two pKa values: pI # $ 1 2$ (pK1 ! pK2) # $ 1 2$ (2.34 ! 9.60) # 5.97 As is evident in Figure 3–10, glycine has a net negative charge at any pH above its pI and will thus move toward the positive electrode (the anode) when placed in an electric field. At any pH below its pI, glycine has a net positive charge and will move toward the negative elec- trode (the cathode). The farther the pH of a glycine so- lution is from its isoelectric point, the greater the net electric charge of the population of glycine molecules. At pH 1.0, for example, glycine exists almost entirely as the form !H3NOCH2OCOOH, with a net positive charge of 1.0. At pH 2.34, where there is an equal mix- ture of !H3NOCH2OCOOH and !H3NOCH2OCOO", the average or net positive charge is 0.5. The sign and the magnitude of the net charge of any amino acid at any pH can be predicted in the same way. Amino Acids Differ in Their Acid-Base Properties The shared properties of many amino acids permit some simplifying generalizations about their acid-base behav- iors. First, all amino acids with a single !-amino group, a single !-carboxyl group, and an R group that does not ionize have titration curves resembling that of glycine (Fig. 3–10). These amino acids have very similar, al- though not identical, pKa values: pKa of the OCOOH C H3N ! C COOH C CH C H N H2 H H3N ! C COO" CH2 H H3N ! C COO" CH2 H H2N C CH2 H pK1 # 1.82 pKR # 6.0 pK2 # 9.17 C H N CH C H N ! H C H N CH C H N ! H C H N CH C H N 10 8 6 4 2 0 1.0 2.0 3.0 pH OH" (equivalents) (b) COO" H N Histidine pK2pKRpK1 8885d_c03_084 12/23/03 10:21 AM Page 84 mac111 mac111:reb: Ponto isoelétrico (pI) Para a glicina pH onde a carga global é igual a zero pH abaixo do pI pH = pI pH acima do pI group in the range of 1.8 to 2.4, and pKa of the ONH3! group in the range of 8.8 to 11.0 (Table 3–1). Second, amino acids with an ionizable R group have more complex titration curves, with three stages corre- sponding to the three possible ionization steps; thus they have three pKa values. The additional stage for the titration of the ionizable R group merges to some extent with the other two. The titration curves for two amino acids of this type, glutamate and histidine, are shown in Figure 3–12. The isoelectric points reflect the nature of the ionizing R groups present. For example, glutamate Chapter 3 Amino Acids, Peptides, and Proteins84 10 8 6 4 2 0 Glutamate H3N ! N ! N ! C COOH C C COOH H2 H2 H pK1 H3 C COO" C C COOH H2 H2 H pKR H3 C COO" C C COO" H2 H2 H pK2 H2N C COO" C C COO" H2 H2 H pK2 # 9.67 pKR # 4.25 pK1 # 2.19 1.0 2.0 3.0 pH OH" (equivalents) (a) FIGURE 3–12 Titration curves for (a) glutamate and (b) histidine. The pKa of the R group is designated here as pKR. The second piece of information provided by the titration curve of glycine is that this amino acid has two regions of buffering power. One of these is the relatively flat portion of the curve, extending for approximately 1 pH unit on either side of the first pKa of 2.34, indi- cating that glycine is a good buffer near this pH. The other buffering zone is centered around pH 9.60. (Note that glycine is not a good buffer at the pH of intracel- lular fluid or blood, about 7.4.) Within the buffering ranges of glycine, the Henderson-Hasselbalch equation (see Box 2–3) can be used to calculate the proportions of proton-donor and proton-acceptor species of glycine required to make a buffer at a given pH. Titration Curves Predict the Electric Charge of Amino Acids Another important piece of information derived from the titration curve of an amino acid is the relationship between its net electric charge and the pH of the solu- tion. At pH 5.97, the point of inflection between the two stages in its titration curve, glycine is present pre- dominantly as its dipolar form, fully ionized but with no net electric charge (Fig. 3–10). The characteristic pH at which the net electric charge is zero is called the isoelectric point or isoelectric pH, designated pI. For glycine, which has no ionizable group in its side chain, the isoelectric point is simply the arithmetic mean of the two pKa values: pI # $ 1 2$ (pK1 ! pK2) # $ 1 2$ (2.34 ! 9.60) # 5.97 As is evident in Figure 3–10, glycine has a net negative charge at any pH above its pI and will thus move toward the positive electrode (the anode) when placed in an electric field. At any pH below its pI, glycine has a net positive charge and will move toward the negative elec- trode (the cathode). The farther the pH of a glycine so- lution is from its isoelectric point, the greater the net electric charge of the population of glycine molecules. At pH 1.0, for example, glycine exists almost entirely as the form !H3NOCH2OCOOH, with a net positive charge of 1.0. At pH 2.34, where there is an equal mix- ture of !H3NOCH2OCOOH and !H3NOCH2OCOO", the average or net positive charge is 0.5. The sign and the magnitude of the net charge of any amino acid at any pH can be predicted in the same way. Amino Acids Differ in Their Acid-Base Properties The shared properties of many amino acids permit some simplifying generalizations about their acid-base behav- iors. First, all amino acids with a single !-amino group, a single !-carboxyl group, and an R group that does not ionize have titration curves resembling that of glycine (Fig. 3–10). These amino acids have very similar, al- though not identical, pKa values: pKa of the OCOOH C H3N ! C COOH C CH C H N H2 H H3N ! C COO" CH2 H H3N ! C COO" CH2 H H2N C CH2 H pK1 # 1.82 pKR # 6.0 pK2 # 9.17 C H N CH C H N ! H C H N CH C HN ! H C H N CH C H N 10 8 6 4 2 0 1.0 2.0 3.0 pH OH" (equivalents) (b) COO" H N Histidine pK2pKRpK1 8885d_c03_084 12/23/03 10:21 AM Page 84 mac111 mac111:reb: group in the range of 1.8 to 2.4, and pKa of the ONH3! group in the range of 8.8 to 11.0 (Table 3–1). Second, amino acids with an ionizable R group have more complex titration curves, with three stages corre- sponding to the three possible ionization steps; thus they have three pKa values. The additional stage for the titration of the ionizable R group merges to some extent with the other two. The titration curves for two amino acids of this type, glutamate and histidine, are shown in Figure 3–12. The isoelectric points reflect the nature of the ionizing R groups present. For example, glutamate Chapter 3 Amino Acids, Peptides, and Proteins84 10 8 6 4 2 0 Glutamate H3N ! N ! N ! C COOH C C COOH H2 H2 H pK1 H3 C COO" C C COOH H2 H2 H pKR H3 C COO" C C COO" H2 H2 H pK2 H2N C COO" C C COO" H2 H2 H pK2 # 9.67 pKR # 4.25 pK1 # 2.19 1.0 2.0 3.0 pH OH" (equivalents) (a) FIGURE 3–12 Titration curves for (a) glutamate and (b) histidine. The pKa of the R group is designated here as pKR. The second piece of information provided by the titration curve of glycine is that this amino acid has two regions of buffering power. One of these is the relatively flat portion of the curve, extending for approximately 1 pH unit on either side of the first pKa of 2.34, indi- cating that glycine is a good buffer near this pH. The other buffering zone is centered around pH 9.60. (Note that glycine is not a good buffer at the pH of intracel- lular fluid or blood, about 7.4.) Within the buffering ranges of glycine, the Henderson-Hasselbalch equation (see Box 2–3) can be used to calculate the proportions of proton-donor and proton-acceptor species of glycine required to make a buffer at a given pH. Titration Curves Predict the Electric Charge of Amino Acids Another important piece of information derived from the titration curve of an amino acid is the relationship between its net electric charge and the pH of the solu- tion. At pH 5.97, the point of inflection between the two stages in its titration curve, glycine is present pre- dominantly as its dipolar form, fully ionized but with no net electric charge (Fig. 3–10). The characteristic pH at which the net electric charge is zero is called the isoelectric point or isoelectric pH, designated pI. For glycine, which has no ionizable group in its side chain, the isoelectric point is simply the arithmetic mean of the two pKa values: pI # $ 1 2$ (pK1 ! pK2) # $ 1 2$ (2.34 ! 9.60) # 5.97 As is evident in Figure 3–10, glycine has a net negative charge at any pH above its pI and will thus move toward the positive electrode (the anode) when placed in an electric field. At any pH below its pI, glycine has a net positive charge and will move toward the negative elec- trode (the cathode). The farther the pH of a glycine so- lution is from its isoelectric point, the greater the net electric charge of the population of glycine molecules. At pH 1.0, for example, glycine exists almost entirely as the form !H3NOCH2OCOOH, with a net positive charge of 1.0. At pH 2.34, where there is an equal mix- ture of !H3NOCH2OCOOH and !H3NOCH2OCOO", the average or net positive charge is 0.5. The sign and the magnitude of the net charge of any amino acid at any pH can be predicted in the same way. Amino Acids Differ in Their Acid-Base Properties The shared properties of many amino acids permit some simplifying generalizations about their acid-base behav- iors. First, all amino acids with a single !-amino group, a single !-carboxyl group, and an R group that does not ionize have titration curves resembling that of glycine (Fig. 3–10). These amino acids have very similar, al- though not identical, pKa values: pKa of the OCOOH C H3N ! C COOH C CH C H N H2 H H3N ! C COO" CH2 H H3N ! C COO" CH2 H H2N C CH2 H pK1 # 1.82 pKR # 6.0 pK2 # 9.17 C H N CH C H N ! H C H N CH C H N ! H C H N CH C H N 10 8 6 4 2 0 1.0 2.0 3.0 pH OH" (equivalents) (b) COO" H N Histidine pK2pKRpK1 8885d_c03_084 12/23/03 10:21 AM Page 84 mac111 mac111:reb: Ponto isoelétrico (pI) Para a glicina pH onde a carga global é igual a zero pH abaixo do pI pH = pI pH acima do pI Section 4-1. The Amino Acids of Proteins 69 Table 4-1 (Continued) Name Residue Average Three-Letter Symbol, Structural Mass Occurrence pK1 pK2 pKR and One-Letter Symbol Formulaa (D)b in Proteins (%)c !-COOHd !-d Side Chaind Amino acids with uncharged polar side chains Serine 87.1 6.5 2.19 9.21 Ser S Threonine 101.1 5.3 2.09 9.10 Thr T Asparaginef 114.1 4.0 2.14 8.72 Asn N Glutaminef 128.1 3.9 2.17 9.13 Gln Q Tyrosine 163.2 2.9 2.20 9.21 10.46 (phenol) Tyr Y Cysteine 103.1 1.4 1.92 10.70 8.37 (sulfhydryl) Cys C Amino acids with charged polar side chains Lysine 128.2 5.9 2.16 9.06 10.54 (ε-NH"3 ) Lys K Arginine 156.2 5.5 1.82 8.99 12.48 (guanidino) Arg R Histidinee 137.1 2.3 1.80 9.33 6.04 (imidazole) His H Aspartic acidf 115.1 5.4 1.99 9.90 3.90 (#-COOH) Asp D Glutamic acidf 129.1 6.8 2.10 9.47 4.07 ($-COOH) Glu E NH"d3 C COO% O% C O CH2 CH2H NH3" C COO% CCH2 CH2 CH2 NHH NH2 NH3" NH2 " N H 1 2 3 4 5C COO% NH" CH2H NH3" C COO% O% C O CH2H NH3" C COO% CH2 OHH NH3" C COO% CH2 SHH NH3" C COO% CH2 CH2 CH2 CH2H NH3" NH3" C COO% NH2 C O CH2CH2H NH3" C COO% NH2 C O CH2H NH3" C COO% OHCH2H NH3" C COO% C CH3 H OH H * NH3" JWCL281_c04_065-081.qxd 5/31/10 1:37 PM Page 69 Section 4-1. The Amino Acids of Proteins 69 Table 4-1 (Continued) Name Residue Average Three-Letter Symbol, Structural Mass Occurrence pK1 pK2 pKR and One-Letter Symbol Formulaa (D)b in Proteins (%)c !-COOHd !-d Side Chaind Amino acids with uncharged polar side chains Serine 87.1 6.5 2.19 9.21 Ser S Threonine 101.1 5.3 2.09 9.10 Thr T Asparaginef 114.1 4.0 2.14 8.72 Asn N Glutaminef 128.1 3.9 2.17 9.13 Gln Q Tyrosine 163.2 2.9 2.20 9.21 10.46 (phenol) Tyr Y Cysteine 103.1 1.4 1.92 10.70 8.37 (sulfhydryl) Cys C Amino acids with charged polar side chains Lysine 128.2 5.9 2.16 9.06 10.54 (ε-NH"3 ) Lys K Arginine 156.2 5.5 1.82 8.99 12.48 (guanidino) Arg R Histidinee 137.1 2.3 1.80 9.33 6.04 (imidazole) His H Aspartic acidf 115.1 5.4 1.99 9.90 3.90 (#-COOH) Asp D Glutamic acidf 129.1 6.8 2.10 9.47 4.07 ($-COOH) Glu E NH"d3 C COO% O% C O CH2 CH2H NH3" C COO% CCH2 CH2 CH2 NHH NH2 NH3" NH2 " N H 1 2 3 4 5C COO% NH" CH2H NH3" C COO% O% C O CH2H NH3" C COO% CH2 OHH NH3" C COO% CH2 SHH NH3" C COO% CH2 CH2 CH2 CH2H NH3" NH3" C COO% NH2 C O CH2CH2H NH3" C COO% NH2 C O CH2H NH3" C COO% OHCH2H NH3" C COO% C CH3 H OH H * NH3" JWCL281_c04_065-081.qxd 5/31/10 1:37 PM Page 69 Curva de 1tulação do glutamato Curva de 1tulação da his1dina Observe a curva de =tulação do aminoácido his=dina (His). U=lizando a informação fornecida abaixo, iden=fique o pK para todos os grupos ionizáveis e as espécies predominantes da his=dina em cada posição indicada na curva pelas letras de A a G. OBS: Algumas posições tem mais de uma resposta. Nem todas as informações disponíveis deverão ser u=lizadas. Exercício His+2 His+ His-‐2 His0 His-‐ [His+2]= [His+] [His+]= [His0] [His0]= [His-‐] pI pK do grupo carboxila pK do grupo amino pK da cadeia lateral
Compartilhar